<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html><head><title></title>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<link rel="stylesheet" type="text/css" href="search.css"/>
<script type="text/javascript" src="search.js"></script>
</head>
<body class="SRPage">
<div id="SRIndex">
<div class="SRStatus" id="Loading">Loading...</div>
<div class="SRResult" id="SR_default_5fgap_5fextension_5fscore">
 <div class="SREntry">
  <a id="Item0" onkeydown="return searchResults.Nav(event,0)" onkeypress="return searchResults.Nav(event,0)" onkeyup="return searchResults.Nav(event,0)" class="SRSymbol" href="../classmoltk_1_1MatrixScorer__.html#ae46f2161ce2413aa901cfe80d79b4ac3" target="_parent">default_gap_extension_score</a>
  <span class="SRScope">moltk::MatrixScorer_</span>
 </div>
</div>
<div class="SRResult" id="SR_default_5fgap_5fopen_5fscore">
 <div class="SREntry">
  <a id="Item1" onkeydown="return searchResults.Nav(event,1)" onkeypress="return searchResults.Nav(event,1)" onkeyup="return searchResults.Nav(event,1)" class="SRSymbol" href="../classmoltk_1_1MatrixScorer__.html#aa6e2fb51837602663ca39a4ba1b9fa3f" target="_parent">default_gap_open_score</a>
  <span class="SRScope">moltk::MatrixScorer_</span>
 </div>
</div>
<div class="SRResult" id="SR_description">
 <div class="SREntry">
  <a id="Item2" onkeydown="return searchResults.Nav(event,2)" onkeypress="return searchResults.Nav(event,2)" onkeyup="return searchResults.Nav(event,2)" class="SRSymbol" href="../classmoltk_1_1Biosequence.html#a686fd896dd4c0996dcd7c98368178bc9" target="_parent">description</a>
  <span class="SRScope">moltk::Biosequence</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension">
 <div class="SREntry">
  <a id="Item3" onkeydown="return searchResults.Nav(event,3)" onkeypress="return searchResults.Nav(event,3)" onkeyup="return searchResults.Nav(event,3)" class="SRSymbol" href="../structmoltk_1_1units_1_1Dimension.html" target="_parent">Dimension</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5famount">
 <div class="SREntry">
  <a id="Item4" onkeydown="return searchResults.Nav(event,4)" onkeypress="return searchResults.Nav(event,4)" onkeyup="return searchResults.Nav(event,4)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360ac99ba632ad5179828b5b8cc695cf4a15" target="_parent">DIMENSION_AMOUNT</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5fangle">
 <div class="SREntry">
  <a id="Item5" onkeydown="return searchResults.Nav(event,5)" onkeypress="return searchResults.Nav(event,5)" onkeyup="return searchResults.Nav(event,5)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360af9dce97ec1ac48d83325b99f9ae02215" target="_parent">DIMENSION_ANGLE</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5fcharge">
 <div class="SREntry">
  <a id="Item6" onkeydown="return searchResults.Nav(event,6)" onkeypress="return searchResults.Nav(event,6)" onkeyup="return searchResults.Nav(event,6)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360a1346f4bcddd1ebd3f6a48487e0441bd7" target="_parent">DIMENSION_CHARGE</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5finformation">
 <div class="SREntry">
  <a id="Item7" onkeydown="return searchResults.Nav(event,7)" onkeypress="return searchResults.Nav(event,7)" onkeyup="return searchResults.Nav(event,7)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360a88c696a7f3b61520db07aa3e260770c6" target="_parent">DIMENSION_INFORMATION</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5flength">
 <div class="SREntry">
  <a id="Item8" onkeydown="return searchResults.Nav(event,8)" onkeypress="return searchResults.Nav(event,8)" onkeyup="return searchResults.Nav(event,8)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360a351ee817f5459adbc77b2ec5db260e88" target="_parent">DIMENSION_LENGTH</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5fmass">
 <div class="SREntry">
  <a id="Item9" onkeydown="return searchResults.Nav(event,9)" onkeypress="return searchResults.Nav(event,9)" onkeyup="return searchResults.Nav(event,9)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360a59e856f36fd2bfa90321ec6e432dec0d" target="_parent">DIMENSION_MASS</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimension_5ftime">
 <div class="SREntry">
  <a id="Item10" onkeydown="return searchResults.Nav(event,10)" onkeypress="return searchResults.Nav(event,10)" onkeyup="return searchResults.Nav(event,10)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360a5f0d01290e7b611e552ff8319d035cf9" target="_parent">DIMENSION_TIME</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimensionindex">
 <div class="SREntry">
  <a id="Item11" onkeydown="return searchResults.Nav(event,11)" onkeypress="return searchResults.Nav(event,11)" onkeyup="return searchResults.Nav(event,11)" class="SRSymbol" href="../namespacemoltk_1_1units.html#afed1f2d4160617c10e7fd090f8ff7360" target="_parent">DimensionIndex</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimensionlessdimension">
 <div class="SREntry">
  <a id="Item12" onkeydown="return searchResults.Nav(event,12)" onkeypress="return searchResults.Nav(event,12)" onkeyup="return searchResults.Nav(event,12)" class="SRSymbol" href="../namespacemoltk_1_1units.html#ad1f08edba26688bdf12c25384d9155cf" target="_parent">DimensionlessDimension</a>
  <span class="SRScope">moltk::units</span>
 </div>
</div>
<div class="SRResult" id="SR_dimensiontype">
 <div class="SREntry">
  <a id="Item13" onkeydown="return searchResults.Nav(event,13)" onkeypress="return searchResults.Nav(event,13)" onkeyup="return searchResults.Nav(event,13)" class="SRSymbol" href="../structmoltk_1_1units_1_1Unit.html#a4e4e24eb5e9a5d43321305d915c538f9" target="_parent">DimensionType</a>
  <span class="SRScope">moltk::units::Unit</span>
 </div>
</div>
<div class="SRResult" id="SR_displacement">
 <div class="SREntry">
  <a id="Item14" onkeydown="return searchResults.Nav(event,14)" onkeypress="return searchResults.Nav(event,14)" onkeyup="return searchResults.Nav(event,14)" class="SRSymbol" href="../namespacemoltk.html#a13b47fe109e93238de3d383f378db960" target="_parent">Displacement</a>
  <span class="SRScope">moltk</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5falign_5fgapped_5falignments">
 <div class="SREntry">
  <a id="Item15" onkeydown="return searchResults.Nav(event,15)" onkeypress="return searchResults.Nav(event,15)" onkeyup="return searchResults.Nav(event,15)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#ae2384a91af43f1f96d02fa69319a0a8aad39f6552ff8d735f2b69a72f560d8c90" target="_parent">DP_ALIGN_GAPPED_ALIGNMENTS</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5falign_5fglobal">
 <div class="SREntry">
  <a id="Item16" onkeydown="return searchResults.Nav(event,16)" onkeypress="return searchResults.Nav(event,16)" onkeyup="return searchResults.Nav(event,16)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#aa392b3f92a66c78410a845eb35e069b4af155cf0d0612b514f7738fa8de8735ce" target="_parent">DP_ALIGN_GLOBAL</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5falign_5flocal">
 <div class="SREntry">
  <a id="Item17" onkeydown="return searchResults.Nav(event,17)" onkeypress="return searchResults.Nav(event,17)" onkeyup="return searchResults.Nav(event,17)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#aa392b3f92a66c78410a845eb35e069b4a42868d0ce46f2b0c694131013b187e0d" target="_parent">DP_ALIGN_LOCAL</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5falign_5fungapped_5fsequences">
 <div class="SREntry">
  <a id="Item18" onkeydown="return searchResults.Nav(event,18)" onkeypress="return searchResults.Nav(event,18)" onkeyup="return searchResults.Nav(event,18)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#ae2384a91af43f1f96d02fa69319a0a8aa19b182379f9aee058d724619e502727c" target="_parent">DP_ALIGN_UNGAPPED_SEQUENCES</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5fmemory_5flarge">
 <div class="SREntry">
  <a id="Item19" onkeydown="return searchResults.Nav(event,19)" onkeypress="return searchResults.Nav(event,19)" onkeyup="return searchResults.Nav(event,19)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#a3847dc6be50dae17fff97f2d922647feab8548c282fd21547171c41cb000859b2" target="_parent">DP_MEMORY_LARGE</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5fmemory_5fsmall">
 <div class="SREntry">
  <a id="Item20" onkeydown="return searchResults.Nav(event,20)" onkeypress="return searchResults.Nav(event,20)" onkeyup="return searchResults.Nav(event,20)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#a3847dc6be50dae17fff97f2d922647fea55075aaaa2895a6d9dd46271a9ca0ab3" target="_parent">DP_MEMORY_SMALL</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dp_5fparams_2ehpp">
 <div class="SREntry">
  <a id="Item21" onkeydown="return searchResults.Nav(event,21)" onkeypress="return searchResults.Nav(event,21)" onkeyup="return searchResults.Nav(event,21)" class="SRSymbol" href="../dp__params_8hpp.html" target="_parent">dp_params.hpp</a>
 </div>
</div>
<div class="SRResult" id="SR_dpaligngapping">
 <div class="SREntry">
  <a id="Item22" onkeydown="return searchResults.Nav(event,22)" onkeypress="return searchResults.Nav(event,22)" onkeyup="return searchResults.Nav(event,22)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#ae2384a91af43f1f96d02fa69319a0a8a" target="_parent">DPAlignGapping</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dpalignscale">
 <div class="SREntry">
  <a id="Item23" onkeydown="return searchResults.Nav(event,23)" onkeypress="return searchResults.Nav(event,23)" onkeyup="return searchResults.Nav(event,23)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#aa392b3f92a66c78410a845eb35e069b4" target="_parent">DPAlignScale</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dpcell">
 <div class="SREntry">
  <a id="Item24" onkeydown="return searchResults.Nav(event,24)" onkeypress="return searchResults.Nav(event,24)" onkeyup="return searchResults.Nav(event,24)" class="SRSymbol" href="../structmoltk_1_1dp_1_1DPCell.html" target="_parent">DPCell</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dpmemorymodel">
 <div class="SREntry">
  <a id="Item25" onkeydown="return searchResults.Nav(event,25)" onkeypress="return searchResults.Nav(event,25)" onkeyup="return searchResults.Nav(event,25)" class="SRSymbol" href="../namespacemoltk_1_1dp.html#a3847dc6be50dae17fff97f2d922647fe" target="_parent">DPMemoryModel</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dpposition_2ehpp">
 <div class="SREntry">
  <a id="Item26" onkeydown="return searchResults.Nav(event,26)" onkeypress="return searchResults.Nav(event,26)" onkeyup="return searchResults.Nav(event,26)" class="SRSymbol" href="../DPPosition_8hpp.html" target="_parent">DPPosition.hpp</a>
 </div>
</div>
<div class="SRResult" id="SR_dpposition_3c_20score_5ftype_2c_20dp_3a_3adp_5falign_5fgapped_5falignments_2c_20gap_5fnsegs_20_3e">
 <div class="SREntry">
  <a id="Item27" onkeydown="return searchResults.Nav(event,27)" onkeypress="return searchResults.Nav(event,27)" onkeyup="return searchResults.Nav(event,27)" class="SRSymbol" href="../structmoltk_1_1dp_1_1DPPosition_3_01SCORE__TYPE_00_01dp_1_1DP__ALIGN__GAPPED__ALIGNMENTS_00_01GAP__NSEGS_01_4.html" target="_parent">DPPosition&lt; SCORE_TYPE, dp::DP_ALIGN_GAPPED_ALIGNMENTS, GAP_NSEGS &gt;</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dpposition_3c_20score_5ftype_2c_20dp_3a_3adp_5falign_5fungapped_5fsequences_2c_20gap_5fnsegs_20_3e">
 <div class="SREntry">
  <a id="Item28" onkeydown="return searchResults.Nav(event,28)" onkeypress="return searchResults.Nav(event,28)" onkeyup="return searchResults.Nav(event,28)" class="SRSymbol" href="../structmoltk_1_1dp_1_1DPPosition_3_01SCORE__TYPE_00_01dp_1_1DP__ALIGN__UNGAPPED__SEQUENCES_00_01GAP__NSEGS_01_4.html" target="_parent">DPPosition&lt; SCORE_TYPE, dp::DP_ALIGN_UNGAPPED_SEQUENCES, GAP_NSEGS &gt;</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRResult" id="SR_dptable_2ehpp">
 <div class="SREntry">
  <a id="Item29" onkeydown="return searchResults.Nav(event,29)" onkeypress="return searchResults.Nav(event,29)" onkeyup="return searchResults.Nav(event,29)" class="SRSymbol" href="../DPTable_8hpp.html" target="_parent">DPTable.hpp</a>
 </div>
</div>
<div class="SRResult" id="SR_dptable_3c_20score_5ftype_2c_20dp_5fmemory_5flarge_2c_20align_5ftype_2c_201_20_3e">
 <div class="SREntry">
  <a id="Item30" onkeydown="return searchResults.Nav(event,30)" onkeypress="return searchResults.Nav(event,30)" onkeyup="return searchResults.Nav(event,30)" class="SRSymbol" href="../structmoltk_1_1dp_1_1DPTable_3_01SCORE__TYPE_00_01DP__MEMORY__LARGE_00_01ALIGN__TYPE_00_011_01_4.html" target="_parent">DPTable&lt; SCORE_TYPE, DP_MEMORY_LARGE, ALIGN_TYPE, 1 &gt;</a>
  <span class="SRScope">moltk::dp</span>
 </div>
</div>
<div class="SRStatus" id="Searching">Searching...</div>
<div class="SRStatus" id="NoMatches">No Matches</div>
<script type="text/javascript"><!--
document.getElementById("Loading").style.display="none";
document.getElementById("NoMatches").style.display="none";
var searchResults = new SearchResults("searchResults");
searchResults.Search();
--></script>
</div>
</body>
</html>
